MicroscopesBlog: Expert's reviews, news, notes on Microscopes, Centrifuges, Lab Coats, Pipettes, Lab Safety, & more Lab Products!

Monday, August 31, 2009

Water Colors

Colorimeters are devices for determining the concentration of a substance in solution. A colorimeter uses the absorbance of light by the substance to determine the concentration. Filters or light emitting diodes are used to produce the desired light wavelength. Usually colorimeters are part of a test system for specific determinations such as Fluoride, Nitrates, Chlorine concentration etc. in water. These test systems are in wide use in analysis of waste water and drinking water. Orion AQUAfast and Hach water analysis portable colorimeters are examples of water quality test systems. In these test systems a reagent is dissolved in the water sample and reacts specifically with the substance to be determined, such as Chlorine, and the sample changes color. The absorbance is measured and compared to the absorbance of a standard solution for which the level of Chlorine is known. The absorbance is directly proportional to the concentration of Chlorine in the sample.

Friday, August 28, 2009

Bacterial Culture

A microbiological culture, or microbial culture, is a method of multiplying microbial organisms by letting them reproduce in predetermined culture media under controlled laboratory conditions. A microbiological culture is used as a diagnostic tool in microbiology to dermine the amount of an organism present and what type of organism it is. One type of microbial culture is a bacterial culture. Bacteria cultures use a petri dish with a thin layer of agar based media. Bacteria culturing then involves the incubating of the streaked bacteria on the plate in an oven at 37 degrees Celsius. Constant temperature is very important for bacteria culture growth. It is important to know how to culture bacteria if you are a student studying microbiology or if you are a medical technologist. Undergraduate classes and research laboratories are great places to learn how to culture bacteria. BD, Himedia Laboratories, and G-Biosciences provide supplies used for bacterial cultures.

Tuesday, August 25, 2009

A Brewers Best Friend!

Hello to all the brew masters of the world! Let me introduce you to your best friend, the Alcohol Hydrometer. An Alcohol Hydrometer is used to measure the strengths of spirits based on the percentage of alcohol by volume at 20° Celcius. This is an uncomplicated instrument made of blown weighted glass. The Alcohol Hydrometer allows brewers to calculate the specific gravity of their alcohol throughout the brewing process, which is of fundamental importance to the final product. Although a Hydrometer is simple enough in theory, however, it requires subtle and careful application to ensure accurate readings. A sample of the spirit is poured into the Hydrometer Jar and stirred with the thermometer. After your sample has settled the Hydrometer is inserted and allowed to float. The temperature reading and Hydrometer reading are taken and the results compared to the chart which will provide the strength in % alcohol by volume. The chart is suitable for all spirits such as, gin, vodka, and whisky whose alcohol content is not obscured by a high level of sugar, caramel, or other solids. VWR and Nalge Nunc are two brands that carry the Alcohol Hydrometer and Hydrometer Jars.

Monday, August 24, 2009

Beer's Law

No it's not a law about beer as in ale. Beer's law, or the Beer-Lambert law describes the relationship between absorbance of light by a substance, the distance the light travels through the substance, and the concentration of the substance.
A=elc
Where A* is absorbance; e is the molar absorptivity of the substance in L/mole cm; l is the length the light travels through the substance in cm, l is generally 1cm; c is the concentration of the substance in moles/L.
If e is known, the concentration of a substance in solution can be determined. An unknown concentration may also be determined by comparing the absorbance of a known (standard) concentration of the substance with the absorbance of the unknown concentration.
Absorbance can be measured using an instrument as advanced as a double beam scanning UV/VIS absorption spectrophotometer or as simple as a colorimeter. The principle of absorbance is also utilized in detectors for other instrumental techniques such as HPLC determination.
*A=-log(I/Io) where Io is the initial intensity of the light beam and I is the intensity of the light beam after passing through the sample.

Friday, August 21, 2009

Buffer

A buffer solution consists of a weak acid and its conjugate base or a weak base and its conjugate acid. Buffer solutions are designed to keep the ph constant in a variety of chemical and biological applications. Their resistance to ph changes make them very useful in chemical manufacturing and necessary for many biological processes. PBS buffer, TRIS buffer, and SDS buffer are all used in biological applications such as SDS-PAGE and ELISAs. Buffer preparation is critical as any change in concentration of solute will alter the buffer capacity. The bicarbonate buffer system plays a crucial role in maintaining the ph of blood in humans. Biochemical reactions in the human body require a very specific ph range and if the ph changes one can suffer severe physiological damage. Teknova, Mediatech, and Mallinckrodt supply buffers for various chemical and biological applications.

Tuesday, August 18, 2009

Part 2: Right Side Objective Recognition

If you look at the top right side of the Objective you can see the Nosepiece Mounting Thread, all Mounting Threads should be sized according to the Standards of the Royal Microscopical Society (RMS) for universal compatibility. Aberration Correction is (APO) (apochromatic) for the highest degree of correction for spherical and chromatic aberrations. Numerical Aperture is a critical value that indicates the light acceptance angle, which determines the light gathering power the resolving power and the depth of field of the objective. Immersion Medium, an immersion medium is a special oil with a refractive index of 1.51. You would use this oil medium as one way to attain higher working numerical apertures. Working Distance, This is the distance between the objective front lens and the top of the cover glass when the specimen is in focus. Magnification Color Code, Microscope manufacturers label their objectives with color codes to help in rapid identification of the magnification and any specialized immersion media requirements. Spring Loaded Retraction Stopper, The plan apochromat objective illustrated in the photo has a spring-loaded front lens to prevent damage when the objective is accidentally driven onto the surface of a microscope slide.

Monday, August 17, 2009

G Force

RCF RPM? I often get the question "What is the maximum RCF (or g) for these 50 ml centrifuge tubes?" I also get the question "What is the maximum RPM for these 50 ml centrifuge tubes?" The first question is answerable, the second question requires more information. RPM stands for revolutions per minute and is a unit describing how fast a centrifuge rotor or a wheel is spinning. Relative centrifugal force is the acceleration applied to a sample in a centrifuge and is expressed as RCF. Times one earth gravity is the unit for RCF, or "x g". RCF is dependent upon RPM and upon the distance between the sample and the center of the centrifuge rotor (rotational axis). The formula is: Where r is the rotational axis in cm and N is the rotation speed in RPM, centrifuge RPM. So the question about maximum RPM would depend upon how far away the sample is from the center of the rotor. It is important to know the maximum RCF for a centrifuge tube. Unless the tube is perfectly supported in the rotor there will be stresses which will deform or even crack the tube at accelerations beyond maximum RCF.

Friday, August 14, 2009

ELISA

You may have heard the term ELISA if you work in a hospital or laboratory. An ELISA or enzyme linked immunosorbent assay is a laboratory technique used to detect the presence of antibody in a sample. Medical professionals can use an ELISA test to determine the degree to which a person is allergic to a given antigen. The first step of an ELISA protocol calls for an ELISA antigen to bind to the inside of a well (96 well plates are commonly used). A primary antibody is then incubated in the plate. The plate is washed with a buffer before it is incubated with a secondary antibody conjugated to an enzyme. This enzyme will induce a color change in the solution when the appropriate substrate is added. The strenght of this color change is measured in a microplate reader and compared to a control sample. The research can then determine how much antibody is present in their sample. ELISA trouble shooting entails going over each of the steps to make sure they were performed properly as this test is very sensitive. Beckman Coulter, Biohit, and EMD Chemicals supply products used for an ELISA.

Tuesday, August 11, 2009

Spectrophotometer Cuvettes

Cuvette is a term used for the cell which holds the sample in a spectrophotomer. Sometimes the term cuvet is also used. The standard cuvette is 10mm square, about 45mm tall and made of either glass, plastic or quartz. Glass cuvettes are for visible spectrophotometry. Plastic cuvettes can be either for visible or both ultraviolet and visible depending on the type of plastic used. Quartz cuvettes are for UV spectrophotometry. Most spectrophotomer cuvettes are clear on 2 sides and frosted on two sides for handling. If fluorescence measurements are needed a cuvette must be clear on all four sides as fluorescence is detected at right angles to the beam path. If very precise absorbance measurements are required optically matched cells are used for reference and sample. For less precise measurements 1cm glass test tubes can be used. Path length is the distance the spectrophotometer beam passes through the sample. Most cuvettes have a 10mm path length. For samples with very low absorbance long path length cells are used with path lengths of of 20, 30, 50, or even 100mm. For very small volumes a micro cuvette is used. These have volumes of as low as 50ul while maintaining a 10mm optical path length. Flowcells are also available. These are cuvettes where the absorbance can be measured in dynamic systems such as flow injection analysis.

Monday, August 10, 2009

Part 1: Left Side Microscope Objective Recognition

Lets explore the characteristics of a microscope objective. Everything that you need to know about a microscope objective should be visible to you on the outer housing of the objective as seen in the illustration. The illustration is of a standard 60X plan apochromat objective. It contains common markings that include all of the specifications necessary to determine what the objective is designed for and the circumstances necessary for proper use. I am going to list the identifiers for you for easy reference. Manufacture, the name of the manufacture will almost always be marked on the outside of the objective. Flat Field Correction, in this example it is (Plan). A Plan Objective is one that produces a flat field across the entire field of view. Lateral Magnification in the apochromat objective is 60X; however there are objectives ranging from 0.5x to 250x with many sizes in between. Specialized Optical Properties, in this example referred to as DIC (Differential Interference Contrast) is a is a beam-shearing interference system in which the reference beam is sheared off by a very tiny amount. Tube Length, This is the length of the microscope body tube between the nosepiece opening, where the objective is mounted, and the top edge of the observation tubes where the oculars (eyepieces) are inserted. Cover slip Thickness, the thickness of these small glass plates is now standardized at 0.17 mm for most applications, although there is often some variation in thickness within a batch of cover slips. The majority of transmitted light objectives are designed to image specimens that are covered by a cover glass or cover slip. See PART 2 Right Side Objective Recognition Published Tuesday 8-18-09

Friday, August 07, 2009

Western Blot

A western blot is a technique used to detect specific proteins from an extract or tissue sample. Western blots are very specific and take the researcher one step closer to identifying a protein in a given sample. Western blotting involves the transfer of proteins from a gel to a western blot membrane (nitrocellulose is commonly used). An electrical current is used to transfer the proteins from the gel to the nitrocellulose. Once the western blot transfer is complete the nitrocellulose can then be incubated using a western blot antibody specific to the protein of interest that has been transferred to the nitrocellulose. The nitrocellulose can then be incubated with a secondary antibody tagged with a enzyme that will create a color change when given the correct substrate. This will allow the researcher to complete their western blot analysis. A western blot protocol can be located on the internet and can be provided by various biology professors. Whatman, G-Biosciences, and Labnet supply products used in western blotting.

Tuesday, August 04, 2009

Molecular Biology

Molecular Biology is the study of biology at a molecular level. The field overlaps with other areas of biology and chemistry, particularly genetics and biochemistry. This specific field overlaps with other areas of biology and chemistry particularly genetics and biochemistry. Molecular biology chiefly concerns itself with understanding the interactions between the various systems of a cell, including the interactions between DNA, RNA and protein biosynthesis as well as learning how these interactions are regulated. For this there are more than several techniques of molecular biology; Gel Electrophoresis, Macromolecule blotting, PCR, Arrays, Antiquated Technologies as well as several others. There are specific Molecular Biology Reagents that you may need depending on your technique, for cell culture you may need a dehydrated media. If you are working on a statistical study of blood glucose then you might want to use ION specific test strips by JT Baker.