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Monday, November 29, 2010

Microscope Magnification Fun

How about a digital microscopes for the kids this year. When it comes to science for kids a digital microscope is one of the best tools for exploration. A digital microscope makes microscope pictures and short videos which can be used for reports for school or funny electronic greeting cards. Imagine the stuff you can put on your facebook page with microscope magnification. Bugs, rocks, fingers; anything small you wish to magnify can be put under a hand held digital microscope. Look for a microscope with 1.2 mega pixel imaging as this is the same as your computer screen. Celestron and Carson are some manufacturers who make these fun, useful tools.

Friday, November 26, 2010

Test Media

Some test media are designed to provide multiple test results. These include Kligler's iron agar, which determines fermentation reactions for glucose and lactose and the production of hydrogen sulfide. Hydrogen sulfide is produced as a result of the breakdown of the amino acid cysteine. It contains .1% glucose, 1% lactose, peptone, ferrous salts, and phenol red as a pH indicator. This media is prepared as a slant and is inoculated by streaking the slant and stabbing the butt of the tube. This medium is useful in the differentiation of the gram-negative enteric bacteria. When only glucose is utilized the slant turns red and the butt of the test tube is yellow. The slant is red because glucose was degraded aerobically and the ammonia released from peptone utilization caused the aerobic slant to become alkaline. The butt of the tube is yellow because glucose was fermented anaerobically. Kligler's iron agar is a good example of how one type of media can be used to test multiple characteristics in a given species of bacteria.

Thursday, November 25, 2010

Microscope Eyepieces

Microscope eyepieces are the third basic optical component of compound microscopes. The other basic components are the objectives and substage condensers. Eyepieces derive from two basic designs, Ramsden and Huygenian. No matter the design, the important issue is the contribution that the eyepiece(s) make to the optical system that we call the microscope. The eyepiece, also referred to as the microscope ocular, takes the real primary image that is formed at the intermediate image plane and magnifies it so that the eye can view the resulting virtual image at the desired magnification. The total magnification is equal to the product of the objective and the ocular. Thus, a 4X objective combined with a 10X eyepiece produces a final magnification of 40X. Eyepieces come in varying powers with 10X being the most common. Other available powers include 5X and 20X. While the eyepiece does not contribute to the resolution of the primary image, it is important that it be of the same optical quality as the objective since an inferior quality eyepiece can degrade the image produced by the objective. Some objectives can also support accessory components such as pointers and measuring reticles. When purchasing a microscope be sure that the eyepiece(s) will support the ultimate purpose of the system.

Monday, November 22, 2010

LN2

Where can you buy liquid nitrogen? Your local welding supply should have it. Or an industrial gas supplier. You must use the proper dewar to transport the liquid nitrogen. A dewar is different from a thermos because it is designed to handle the extremely cold liquid nitrogen temperature (-196 deg C, -321 deg F) without cracking. Dewars are designed to vent which is extremely important. As liquid nitrogen expands from the liquid to the gas stage it will build up tremendous forces if not allowed to vent and an explosion could occur. LN2 has been more and more a part of the culinary world and more people who do not generally work with it are using it. In addition to the danger of explosion, a user will get burns if they come in contact with the liquid nitrogen. Purveyors of LN2 will not release it to customers without the proper container. However with the proper container there is no restrictions on buying liquid nitrogen. Liquid nitrogen is used in cocktails because it is cold enough to freeze ethanol which has a lower freezing point than water. LN2 is also handy for making ice cream almost instantly.

Friday, November 19, 2010

Hydrolytic and Degradative Enzymes

Bacteria use a variety of degradative and hydrolytic enzymes to degrade large macromolecules into smaller units that can be imported into the cell. Because of the presence of the cell wall, bacteria lack the ability to surround and engulf their food by phagocytosis. Amylases and cellulases degrade starch and cellulose into simple sugars that are then transported into the cell where they are metabolized. Proteases such as casein and gelatin degrade proteins and peptides into amino acids. Lipases convert triglycerides into fatty acids and glycerol. Bacteria also hydrolyze small molecules because they can then acquire carbon compounds. Tryptophane is split into pyruvate and indole by the enzyme trytophanase. The pyruvate is then metabolized however the indole accumulates in the growth medium. The accumulation of indole is the basis for a test that differentiates bacteria that produce tryptophanase from those that do not. The presence or absence of various hydrolytic and and degradative enzymes can be used to identify bacteria.

Thursday, November 18, 2010

Microscope condensers

The condenser is one of three optical components that are common to most modern compound, upright brightfield microscopes. The other two are the objective(s) and the eyepiece(s). The condenser is located above the light source and below the specimen stage. The Abbe condenser, developed by Ernst Karl Abbe around 1870 is considered to be the progenitor of all modern condensing systems. A basic ABBE condenser consists of two lenses and an iris diaphragm. When properly adjusted, it produces an image of the light source at the specimen plane and since there is no color correction usually exhibits red and blue color fringes at the edges of the field of view. The sample is illuminated and the primary image of the sample is formed at the intermediate image plane. The condenser not only illuminates the sample, it also helps to optimize image brightness, contrast and evenness of illumination. Often a daylight blue filter is used along with the condenser to help the sample colors and/or sample stains to appear natural without any color shift or bias. Compound microscopes of all levels almost always incorporate a condenser into their basic configuration.

Wednesday, November 17, 2010

Osteoperosis

Osteoporosis literally means porous bone. It is described as the thinning of bone tissue and loss of bone density over time. There are several reasons a bone can become porous. As well as it can affect a certain demographics over another. Osteoporosis is more common in women than men and is generally caused when the body doesn't create enough new bone and/or too much old bone is reabsorbed by the body. This lost of bone causes the bone to become weak and brittle, making the body more susceptible to fractures and breaks. In fact, the bones can become so weak that an innocent sneeze can cause a bone to break. The lost of bone density does not happen over night and in most cases by the time this disease surfaces with blatant symptoms, the patient is in advance stages of the disease. Homeostasis also plays a role in osteoporosis. A link to this disease is a drop in the hormones estrogen, in women over 50, and testosterone, in men over 70. Caucasian women with a history of osteoporosis in there family have a greater than average risk of developing the disease. Please see list below regarding other risk and symptom information. Risk Factors: Chronic Rheumatoid Arthritis; Chronic Kidney Disease; Eating Disorders; Corticosteriod medications every day; Hyperpathyroidsim; Amenorrhea; Binge and Surplus amounts of Alcohol; Hormone treatments for prostate or breast cancer; Low Body Weight; Smoking; Too Little Calcium in Diet; Family History of the Disease Symptoms: Bone pain or tenderness; Fractures and breaking of bone easily; Loss of height over time; Kyphosis

*** For more information regarding this disease please go to http://www.nof.org/

Monday, November 15, 2010

Monoclonal antibodies

Antibodies which are cloned and specific to one antigen are called monoclonal. They are generally made from mouse spleen cells fused with myeloma cells and grown in a culture media. The mouse has been immunized with the molecule of interest, the antigen. The specificity of these antibodies is what makes them so useful. They can be designed to target antigens on cancer cells; this can trigger an immune response to that cancer cell. Monoclonal antibodies can also be used to deliver treatments such as radioisotopes or toxins specifically to the cancer cell. Monoclonal antibodies can be conjugated (linked) with pharmaceuticals for treatment of autoimmune diseases such as Crohn's disease and rheumatoid arthritis. In immunohistochemistry antibodies specific to antigens on a tissue section are conjugated to a fluorescent compounds. When the tissue section is viewed under a fluorescent microscope the object of interested fluoresces. Monoclonal antibodies are also conjugated to enzymes such as horseradish peroxidase (hrp). These are used in immuno assays to detect antigens in solution.

Friday, November 12, 2010

Semmelweis and Hand Scrubbing

In 1846 and 1847 Ignaz Semmelweis discovered the importance of hand scrubbing at the Lying-In Hospital in Vienna. He was the head of obstetrics and noticed that the death rate due to childbirth fever was approaching 20%. He observed that medical students and doctors were delivering babies after being in dissection and autopsy rooms. These doctors were not washing their hands after being in these rooms. At the same time, babies delivered by midwives and nurses had a lower death rate. Semmelweis instituted a policy that required doctors to disinfect their hands with bleach prior to examining obstetric patients or delivering babies. As a result, the death rate was lowered to 1%. Today it is routine practice to wash one's hands prior to the examination of a patient and to do a complete surgical scrub before surgery. The human skin contains a wide range of microorganisms. Some protect us from harmful bacteria by outcompeting them for space. Diptheroids are gram-positive bacteria that break down the oily substance in our hair. Staphylococcus epidermidis is non-pathogenic and lives on our skin. It survives by secreting substances that kill other species of bacteria.

Thursday, November 11, 2010

Microscope Objectives

Microscope objectives are the heart and soul of the compound microscope. They are responsible for formation of the intermediate image that the eyepiece(s) then further magnify to produce the image that is ultimately observed, analyzed and/or photographed. Common microscope objectives are usually identified as achromats, plan-achromats and plan-apochromats. The criteria for these categories are well defined and well recognized. Achromatic objectives may account for as much as 90% of the objectives seen in everyday use. They are corrected for chromatic aberration (color anomalies) for two wavelengths of light, usually red and blue and one wavelength of light, usually yellow for spherical aberration. Achromats are readily available, inexpensive and quite useful for much of routine microscopy. They, can however, exhibit a lack of sharp focus at the edges of the field of view that we recognize as spherical aberration, but color rendition is acceptable. Plan-achromatic objectives address this lack of peripheral sharpness by incorporating additional optical elements that cause the entire visible field of view to be in sharp focus. They are somewhat more expensive than achromats, but the image improvement is worth the additional cost. Plan-apochromatic objectives offer the highest level of correction for normal brightfield microscopy. These objectives have a third color correction in the green wavelength where color vision is most sensitive and an additional wavelength of spherical correction. These additional design enhancements provide the most highly corrected brightfield images. While these objectives are the most expensive, they also provide the highest levels of sharpness, contrast and resolution for the most demanding microscopists. Microscope objectives usually have engraving on their barrels to indicate the level of correction as well as other useful information. Unmarked objectives can be assumed to be achromats. When shopping for a microscope, pay special attention to the description of the objectives to help evaluate the overall quality of the instrument you are considering and the tasks you want to accomplish with it.

Wednesday, November 10, 2010

Welcome to the Wonderful World of Sonography!

Sonography or ultrasound scanning is a procedure that uses high-frequency sound waves to produce internal pictures of the human body. Unlike radiology, which uses x-rays by ionizing radition to produce a still image, sonography utilizes sound waves to create real time imaging of internal organs and processes. An ultrasound is ideal because it is non-evasive and can be use to diagnose and treat medical conditions. Ultrasounds are most commonly know in the obstetrics field to monitor growth and development of human embryos/fetuses during the prenatal period of pregnancy. However, ultrasounds are used in a variety of different medical fields including but not limited to: cardiology, gastroenterology, neurology, urology and musculosektal diagnostics. An ultrasound unit consists of several items including a console, computer, video display screen and transducer. The transducer's function is to send out sound waves throughout the tissues of the body and listen for return echoes to create an image. The image is produced from the amplitude frequency and the time it takes for the echo to return from the patients body/tissue to the transducer. In order for the transducer to work effectively a water-based gel is applied to the part of the body being examined to eliminate air pockets between the skin and transducer.

Monday, November 08, 2010

Sous Vide Recipes

A circulating bath or a bath with an immersion circulator is the equipment needed for the cooking technique known as Sous Vide. The technique involves placing the food in a vacuum sealed pouch and bringing it to the desired internal temperature, or 1 degree above, quickly and holding there for extended periods of time. Since the temperature of the food is never above the serving temperature, it can be held at extended periods of time without degrading the texture. This technique is especially valuable for extended cooking of tougher meats but can be also used for fish and poultry. It is the uniform heating and precise temperature control which makes recirculating baths useful for the Sous Vide technique. Even though the food is not elevated to the higher temperatures used in conventional cooking, the extended periods of time the food is held at the lower temperatures brings down pathogens to a safe level. Charts are available which give the chef cooking times and temperatures for various types of food. These charts take into consideration the desired serving temperature and the size or thickness of the food. In a restaurant the food would be plated and sauced from the pouch maintaining the serving temperature. Commercially the food is chilled very quickly and either kept refrigerated or frozen. In this case it is very important that the food be chilled as quickly as possible so that any spores cannot become new pathogens. The book A Practical Guide to Sous Vide Cooking will aid chefs in this technique.

Friday, November 05, 2010

Antiseptics

Everyday, a variety of antiseptics are used to control and/or kill microorganisms. Hospitals disinfect areas using strong chemicals such as sodium hypochlorite, which is identical to houshold bleach. Doctors and nurses use alcohol to swab areas where a needle will be injected. Betadine is used on skin prior to surgeries to ensure that bacteria does not cause infection. Municipalities use chlorine to prevent the spread of bacteria in drinking water and chemical agents are added to food to prevent spoilage. Antiseptics are agents that inhibit or kill microorganisms on living tissue while disinfectants are more harsh and used on non living objects. Some disinfectants are referred to as sterilants or sporocides, which mean they destroy all microbial life including endospores. Ethylene oxide is an example of a sterilizer that is used to sterilize objects that can't be exposed to high heat. Sanitizers, such as those used in the food industry, reduce microbial numbers to safe levels but do not eliminate all microbes. Agents that are bacteriostatic inhibit the growth of bacterial cells but do not kill them.

Thursday, November 04, 2010

Filters and Microscopy

Microscopy is an art as well as a science. Once a specimen slide is placed on the stage of a microscope and brought into sharp focus, the microscopist must determine if the contents of the sample are being demonstrated in the best possible fashion. Many samples, especially in the world of life science are stained with organic or inorganic dyes to bring out as much detail as possible. Depending on the illumination source employed, the stain used and the skill of the microscopist
the rendition of the colors may be less than accurate. One way to correct for this anomaly is to use appriopriate filters in the light path. The general categories that these filters fall into include neutral density, absorptive and interference. Neutral density filters attenuate the strength of the illumination without changing the color of the light. This is important when a specific "color temperature" must be maintained in order for the specimen to exhibit correct color properties. Absorptive and interference filters work by either retarding or enhancing specific colors or color ranges in order to enhance the effect of the stain on the sample. Though they use somewhat different means to accomplish this, the end result is effectively the same. A good way to learn what filter is needed and in what strength is to experiment with familiar samples to gain an understanding of how different filters work. Brightfield microscopes apply filters to such techniques as phase contrast and fluorescence and use other filters to enhance specimen colors in cytological and histological sample preparations.

Wednesday, November 03, 2010

The Amazing Heart!

The Heart is one of the most vital and worked organs in the human body. It is important to understand the basic functions and importance of the heart because Heart Disease is the leading cause of death in the United States with a overwhelming 2,000 deaths per day (1 deaths per 44 seconds)! In addition to knowledge of the importance and functions of the hearts, it is also important to know preventative measures to ensure that this vital pump is working at its best. For the purposes of this blog, I will focus on the functions of the heart. The Heart is a striated involuntary muscle (cardiac) composed of three layers (from inner to outer): endocardium, myocardium, and pericardium. In addition to layers, the heart is divided into four chambers: right and left atrium and right and left ventricle. Each chamber is a one way system designed to not allow deoxgenated or oxygenated blood to return to its previously exited chamber. Therefore, in a correctly functioning body Blood does not flow backwards. Associated with this enter and exit system are four valves: tricuspid, pulmonary, mitral, and aortic. The heart beats in two stages. Stage One: Right and Left Atria contract simultaneously pumping blood to the right and left ventricles to propel blood out of the heart. Stage Two: The muscle than relaxes to allow blood to fill up the heart again. Lastly Noted: The right and left side of the heart have two unique functions. The right side of the heart collects deoxygenated blood and pumps it to the lungs to pick up oxygen and release carbon dioxide. The left side of the heart collects oxygenated blood and carries oxygen and nutrients throughout the cells in the body.

Monday, November 01, 2010

Splitting Light

In spectrophotometers, microscope systems, and other optical instruments beam splitters are used to split a single light beam into 2 paths. A beam splitter consists of 2 triangular prisms of clear optical material such as glass or quartz fused together on the diagonal to form a cube. The diagonal fused surface is covered with a half silvered mirror which is precisely applied to reflect half (or whatever percentage is required) of the light and transmit the other half. Plate beam splitters are also used where the glass plate is half silvered. A beam splitter is used in spectrophotometers to split the incident beam so part will go through the sample and part will be used as a reference. The sample beam intensity is compared to the reference beam and the background noise is subtracted. A comparison of the sample and reference beam also compensates for any drift in beam intensity. Beam splitters are used in many microscope optical systems as well. In fluorescence microscopes a dichromatic beam splitter is used. The dichromatic beam splitter separates the beams based on their wavelength allowing one wavelength to pass through while reflecting another.