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Monday, December 27, 2010

HPLC Method Development

Trial and error is not the only way to develop an HPLC Method. There is simulation software available for method development. This software will save time by simulating changes in the chromatogram due to changes in mobile phase polarity, column particle size, column length, or solvent strength. Are you having trouble resolving two peaks? Do you normally deal with a difficult sample matrix? HPLC simulation software can help save time as the simulation take seconds to run the chromatograms rather than the 2 to 10 minutes normally required for each sample injection. The Molinar Institute offers their DryLab software. You can find other method development software at HPLCweb.com

Friday, December 24, 2010

Microbial Spoilage of Canned Food

Microbial spoilage of canned food occurs when heat processing fails to meet standard requirements. This can occur because of home canning of foods or carelessness in handling the raw materials before canning which results in a high level of contamination that ordinary heat processing may not control. Spoilage can also occur when defective containers permit the entrance of microorganisms after the heat process. Bacteria can cause heat resistant endospores which results in the spoilage of commercially canned foods. The processing of low-acid foods is over particular concern because Clostridium botulinum thrives in this environment and causes botulism food poisoning. There are three types of spoilage: flat sour, T.A., and stinker spoilage. Flat sour pertains to spoilage in which acids are formed with no gas production. T.A. spoilage is caused by thermophilic anaerobes that produce acid and gases in low-acid goods. Cans swell and sometimes burst. Stinker spoilage is due to spore formers that produce hydrogen sulfide and blackening of the can.

Thursday, December 23, 2010

Microbiology and Microscopes

Microbiology is the study of small, living, primarily unicellular organisms. Collectively they can be referred to as microbes and may be bacteria, fungi or other single cell life forms. A common feature to all is that they are quite small and always invisible to the naked eye and therefore are viewed only with the aid of a compound microscope. They can be as small as 1 micron ( a forty-millionth of an inch) and can be as large as 15-20 microns. A hobbyist interested in learning about microbes will require an oil immersion lens usually of 100X magnification to be able to see them with a high degree of resolution. In the case of unstained samples, a phase contrast accessory will also improve image quality. Many beginning microscopists prepare slides of pond water as an initial source of many fascinating examples. Any serious microscopist, whether amateur or aspiring professional will surely want to own an instrument with this capability.

Wednesday, December 22, 2010

Nervous System: CNS Part II

The human body's Nervous system is composed of three major organs: brain, spinal cord and nerves. These three organs are divided into two systems. The Central Nervous System is composed of the brain and spinal cord. The CNS function is to receive impulses from the body, process the information and respond with an action. This system is divided into four sections: Cerebrum (see Part I), Cerebellum, Diencephalon, and Brain Stem.
The Diencephalon, is located below the cerebrum and houses two of the most important functions of the brain within the Thalamus and Hypothalamus. The thalamus relays impulses from the eyes, ears, and skin. It is also responsible for the perception of pain. The Hypothalamus is responsible for body temperature, appetite, sexual desire, emotions, and sleep. It is also responsible for autonomic (involuntary) nervous, cardiovascular, gastrointestinal system functions. In addition, to the release of hormones from the pituitary gland, which functions include but are not limited to, growth, blood pressure, breast milk production and sex organ function.
The Cerebellum is the second largest portion of the brain. Its responsibility is to assist in coordinating voluntary body movements, maintaining equilibrium and balance.
Lastly, the brain stem is composed of three parts. The Middle Brain function is to act as a bridge for impulses between the brain and spinal cord. The Pons is the bridge the connects the Cerebellum to the rest of the brain. The brain is then connected to the spinal cord by the medulla oblongata. It is these divisions and subdivisions of impulses that make us uniquely human.

Friday, December 17, 2010

Bacterial Counts of Foods

The presence of bacteria in food does not mean that the food is spoiled however it is important, in some cases, to measure the bacterial counts of foods. Some food like yogurt, summer sausage, and sauerkraut are produced by microbial fermentation and therefore have high bacterial counts. Post production treatments reduce the total number of bacteria in these foods. Bacteria are naturally associated with some foods like when they are harvested. Green beans, potatoes, and beats have soil bacteria associated with them. The chalky appearance of grapes is due to yeasts that are naturally associated with them. Food can transmit disease very easily. The Centers for Disease Control estimates that 76 million per year in the U.S. become sick from foodborne illness. This illness usually results from bacteria or their toxins introduced to food products during processing, handling, or preparation. Botulism food poisoning results from ingesting a toxin produced by Clostridium botulinum when its endospores grow in improperly home canned foods. One can perform coliform counts to determine if bacteria is contaminated with fecal bacteria. In this method food must be mixed with water and put in a blender before it can be plated with agar.

Thursday, December 16, 2010

Microscopes and USB

Microscopes are all around us and being used in almost every area of science and technology. Almost as common, is the use of microscope cameras to document an observation. Virtually all digital cameras (both still and video) incorporate the ability to communicate with a computer via USB (Universal Serial Bus). The symbol above is the universal identifier for USB communications. A microscope equipped with a digital camera can easily relay images to a computer via a standard cable that is normally supplied with with the camera. The cable connects the camera to the computer and imaging software will upload the images in seconds for both viewing and editing as well as measurement and analysis. These images can be used for publication, e-mailed to a colleague or just saved for future reference. Digital Cameras are available at various levels of resolution and price points from the hundreds to the thousands. A trinocular microscope with a photo port is the most versatile, but there are also eyepiece adapters for digital cameras as well that will fit many models lacking this feature.

Wednesday, December 15, 2010

Nervous System: CNS (Part I)

The human body's Nervous system is composed of three major organs: brain, spinal cord and nerves. These three organs are divided into two systems. The Central Nervous System (CNS) is composed of the brain and spinal cord. The general function of the nervous system is to: coordinate and control human body function; receive sensory input; make decisions; and orders body responses. The CNS function is to receive impulses from the body, process the information and respond with an action. The CNS organ, the brain, is one of the largest organs in the body. The brain coordinates body activities and is the nucleus for thoughts, memory, judgment and emotion. The brain is divided into four sections: cerebrum, cerebellum, diencephalon, and brain stem. The largest portion, found in the upper portion of the brain, is the cerebrum. The cerebrum is in charge of: thoughts, judgement, memory, associate and discrimination skills. The cerebrum is divided into two hemispheres, left and right, with four lobes: frontal, parietal, occipital and temporal. Each lobe controls a specific function(s) within the human body. The frontal lobe controls speech, personality, and motor function. In turn, the parietal lobe receives and interprets nerve functions and interprets language. The occipital lobe controls vision; while, the temporal lobe controls smell and hearing. Although, all four lobes are in the same organ, the functions of each subdivision are unique and work interchangeable to make us wonderful human.

Monday, December 13, 2010

Microscope Slides

A microscope slide and a coverslip (cover glass) are all that is needed for an examination of pond water using a slide microscope. For the beginning and intermediate observer any microscope slide and coverslip will work. There are specialized slides which are optically flat or specially treated for tissue adhesion for the professional microscopist. For beginners or teachers prepared slides are a good introduction to the types of things which are studied using a microscope. The Meade #9o4 25 piece prepared slide kit has a good sampling of various types of plant and animal tissues. If you are interested in a particular line of study such as cell reproduction and development or human and animal parasites the Konus prepared slides will help the student or the teacher focus on the subject. If you are buying a microscope for the student for the first time, remember the blank slides, the cover glasses; and some prepared slides for instant observation.

Friday, December 10, 2010

Reductase Test

The reductase test is used to test the presence of bacteria in raw milk. Milk that contains large numbers of active growing bacteria will have a lowered oxidation-reduction poetential due to the exhaustion of dissolved oxygen by microorganisms. The fact that methylene blue loses its color or becomes reduced in such an environment is the basis for this test. One mL of methylene blue is added to 10mL of milk in a test tube. The tube is then sealed with a rubber stopper and inverted three times to mix. It is placed in a water bath at 35 degrees C and examined at various times over the next 6 hours. The time it takes for the methylene blue to become colorless is the methylene blue reduction time (MBRT). The shorter this time is the the lower the quality of milk. An MBRT of 6 hours is good whereas an MBRT of 30 minutes means poor milk quality. Streptococcus lactis and Escherichia coli are strong reducers and are present at this temperature in raw milk. The main value of this test is that it does not require a high level of training thus reducing operating costs for the laboratory.

Thursday, December 09, 2010

Microscopes & Microscopy

The world of microscopes and the science of microscopy date from the 1600's. Microscopy has fascinated man from the first realization that small objects could be magnified and examined in minute detail. The "homonculus" was thought to be a complete being contained within a human germ cell as early as the 17th century and needed only the time to grow and mature to become a recognizable being. The search for homonculi may have been the earliest inspiration for the development of the modern compound microscope. So where can one go to learn about the development of microscopes and the art and science of microscopy? Fortunately that question is easily answered and resources abound with information from the most basic to the most advanced. A number of major microscope manufacturers sponsor well annotated and well documented web sites and while these may be a little biased in the instruments that are featured the information is nonetheless invaluable. Some of the best include MicroscopyU sponsored by Nikon, the Zeiss site and the Olympus site. So when you decide to enter this fascinating world and invest in a microscope, do some homework, get some basic knowledge and explore the microuniverse around us. Make an informed purchase at a price point you can afford. You may not discover a homonculus or an animolecule, but you are sure to be amazed by what is invisible to the unaided eye.

Wednesday, December 08, 2010

Endocrine System

The endocrine system is a system of glands that secrete hormones throughout the body. Hormones are important to the human function of the body because they influence metabolic rate; water and mineral balance; immune system reactions; and sexual functioning. There are several organs that make up this system which include: adrenal glands; ovaries; pancreas; parathyroid glands; pineal gland; pituitary gland; testes; thymus gland; and thyroid gland.
The two main types of glands within the body are exocrine and endocrine glands. Exocrine glands release secretions into ducts that carry them outside the body. While, endocrine glands are ductless and release hormones directly into the bloodstream.
Here are a few glands and their functions within the human body.
The human body has two adrenal glands in which one is located above each kidney. Each adrenal gland is composed of both a adrenal cortex and adrenal medulla section. The adrenal cortex is responsible for the secretion of steroid hormones into the body. While the adrenal medulla is responsible for adrenaline.
The thymus gland is located in the mediastinum and apart of the immune system. The thymus gland secretes thymosin which is essential for growth and development of T-cells.
The thyroid gland is located on either side of the butterfly shaped trachea. The thyroid gland secretes thyroxine, triiodothyronine and calcitonin. Thyroxine and triiodothyronine adjust metabolic rate and regulate energy production. While calctonin regulates the level of calcium in the bloodstream.

Monday, December 06, 2010

School Microscope

So your student needs a microscope for high school biology class. If the student is looking at slides they will need a compound light microscope. There are 3 important things to look for. The first is good optics. With optics in microscopes you get what you pay for. A microscope with plastic parts and lots of magnification will be frustrating to the student. The second thing to look for is coarse and fine focus. At higher magnifications the student must have fine focus. The last thing is illumination. A mirror for illumination will not be sufficient for High School work. A light and a condenser to focus the light are essential for viewing the objects on the slides. Notice I did not say high magnification was important. Be wary of microscopes claiming 1500X - this level of magnification is not easily obtained even by the most sophisticated microscopes. 400X is sufficient for high school biology work. A good extra to make their work easier would be a mechanical stage.

Friday, December 03, 2010

The API Staph System

The API Staph System, produced by bioMerieux of Raleigh, North Carolina is a reliable method for identifying 23 species of staphylococci. This system consists of 19 microampules that contain dehydrated substrates and/or nutrient media. Except for the coagulase test, all the tests are importatnt in differentiation of Staphylococcus, Kocuria, and Micrococcus. The first step in this procedure is to make a saline suspension of the organism from an isolated colony. A staph strip is then placed in a tray that has a small amount of water added to it to provide humidity during incubation. Next, a sterile Pasteur pipette is used to dispense 2 to 3 drops of the bacterial suspension to each microcupule. The inocculated tray is covered and incubated aerobically for 18-24 hours at 35-37 degrees Celsius. Finally a seven-digit profile number is obtained and used to determine the identity of the organism. Final determination of the species can't be done until one takes into account the source of the specimen, the colony characterisitics, and the antimicrobial susceptibility pattern.

Thursday, December 02, 2010

Microscopic Field of View

One of the characteristics of a microscope eyepiece is the microscopic field of view commonly abbreviated FOV. The size of the FOV is expressed numerically in millimeters and is directly proportional to the combination of the eyepiece and the objective in use. The eyepiece, also referred to as an ocular, has a field stop as part of its design. The FOV is limited by this field stop and is defined as the diameter of the circle of light seen when looking into a microscope. The actual FOV is calculated by dividing the field number (FN) by the objective magnification. An eyepiece with FN=20 used with a 10X objective would have an FOV of 2.0 mm while an eyepiece where FN=26 would have an FOV of 2.6 mm. Widefield oculars have the advantage of showing a larger area of the sample at a given total magnification. Stereoscopic microscopes tend to offer a larger FOV even though their total magnification capabilities are less than compound microscope.

Wednesday, December 01, 2010

White Blood Cells to the Rescue!

Leukocytes or white blood cells are the key component of the human body's immune system and on the first line of defense to protect the body against pathogens and foreign material. White blood cells are divided into three classes: granulocytes, lymphocyte and monocyte. Granulocytes get their names from the granules found within their cytoplasm. Granulocytes make up at least half of the leukocytes within the human body. They are divided into three sub-classes: neutrophils, eosinophils and basophils. Neutrophils is the most common type of leukocyte within the body producing trillions per day within your bone marrow. These cells are in constant reproduction because their life span is less than a day. Neutrophils are most attracted to foreign material, bacteria and inflammation. Upon siting a foreign invader the neutrophils will engulf it and use enzymes and other chemicals from its granules to kill it. If there is a surplus of neutrophils clustered at a site to kill a foreign invader pus will form. Eosinophils, a less common white blood cell, is attracted to parasites in the skin and lungs. While Basophils is attracted to inflammation and carries histamine. When histamine is "over" produced within the human body it causes allergies. Lymphocytes are the second largest class of white blood cells They are divided into two classes: B and T. B-Cells mature in bone marrow and mature into plasma. B cells are attracted to pathogens and form antibodies. Once a pathogen is sited, B cells clone themselves to produce antibodies to fight off the pathogen. T-Cells mature in the thymus gland. T-cells can detect cells within the body that are carrying viruses and kill them. Monocytes mature into macrophages by floating in the bloodstream and entering tissue. They are the largest, in size, white blood cell within the body. Most organs in the body have their own macrophage. The macrophages found within the lungs for example ingest dust, particles, and bacteria. They are also responsible for clean-up of other white blood cells, such as pus. For more information regarding the leukocytes and the immune system please visit: http://health.discovery.com/